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Structural Alignment of MHC-Peptide Complexes using Chime

Click here to view in Jmol
Conserved Residues by Peptide Length
  • Human 8-mer Peptides

  • Human 9-mer Peptides

  • Human 10-mer Peptides

  • Human 13-mer Peptides

  • Human 14-mer Peptides

  • Human 15-mer Peptides

  • Human 20-mer Peptides

  • Murine 8-mer Peptides

  • Murine 9-mer Peptides

  • Murine 10-mer Peptides

  • Murine 13-mer Peptides

  • Murine 14-mer Peptides

  • Murine 16-mer Peptides

  • Rat 9-mer Peptides

  • Conserved Residues by MHC Allele
  • A*0201 9-mer Peptides

  • A*0201 10-mer Peptides

  • B*0801 8-mer Peptides

  • B*0801 9-mer Peptides

  • B*2705 9-mer Peptides

  • B*3501 9-mer Peptides

  • B*5301 9-mer Peptides

  • Cw*0401 9-mer Peptides

  • E*0103 9-mer Peptides

  • H2-Db 9-mer Peptides

  • H2-Db 10-mer Peptides

  • H2-Dd 10-mer Peptides

  • H2-Kb 8-mer Peptides

  • H2-Kb 9-mer Peptides

  • H2-Ld 9-mer Peptides

  • DRB1*0101 13-mer Peptides

  • DRB1*0101 15-mer Peptides



  • 1DLH.pdb
    1FYT.pdb
    1HXY.pdb
    1J8H.pdb
    1JWM.pdb
    1JWS.pdb
    1JWU.pdb
    1KG0.pdb
    1LO5.pdb
    1R5I.pdb
    1SEB.pdb
    1T5W.pdb
    1T5X.pdb
    Select All
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    Click on the links above to visualize the structural alignment based on MHC class and Peptide length.
    To visualize the structural alignment you need Chime plug-in. Click here to download.